I meant to say um, what you said :)<br><br><br><br><div class="gmail_quote">On Tue, Aug 17, 2010 at 6:30 PM, Glen Jarvis <span dir="ltr"><<a href="mailto:glen@glenjarvis.com">glen@glenjarvis.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">OOH, I don't touch gene sequencing... We do protein MSA alignment HMMs -- very different.<div>
<br></div><div>But, I don't really know the theory (deep down) of what I'm doing anyhow... I'm coming with questions, not answers.</div>
<div><br></div><div><br></div><div>Glen<div><div></div><div class="h5"><br><br><div class="gmail_quote">On Tue, Aug 17, 2010 at 5:17 PM, Mike Schachter <span dir="ltr"><<a href="mailto:mike@mindmech.com" target="_blank">mike@mindmech.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Yep, should be a fairly forgiving audience :) I'll also<br>try and brush up on HMMs in gene sequencing and see<br>if I can fill in any gaps.<br><font color="#888888"><br> mike</font><div><div></div><div><br>
<br><br><div class="gmail_quote">On Tue, Aug 17, 2010 at 3:37 PM, Glen Jarvis <span dir="ltr"><<a href="mailto:glen@glenjarvis.com" target="_blank">glen@glenjarvis.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">I also intend to be there. I haven't had a chance to put together my presentation in a very polished way. However, our audience is fairly forgiving if it's succinct and clear, yes?<div>
<br></div><div><font color="#888888">Glen</font><div><div></div><div><br><br><div class="gmail_quote">
On Tue, Aug 17, 2010 at 12:19 AM, Mike Schachter <span dir="ltr"><<a href="mailto:mike@mindmech.com" target="_blank">mike@mindmech.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Yep, just did last Thursday, did you see it? It was sent to<br>both noisebridge-discuss and ml. It's also on the official NB<br>calendar. Should be awesome, looking forward to it!!<br><font color="#888888"><br> mike</font><div>
<div></div><div><br><br><br><div class="gmail_quote">
On Mon, Aug 16, 2010 at 10:23 PM, Thomas Lotze <span dir="ltr"><<a href="mailto:thomas.lotze@gmail.com" target="_blank">thomas.lotze@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Hey all, <br><br>I just wanted to make sure everyone's still on for the HMM extravaganza Wednesday night. Mike, do you want to send out an announcement to the main Noisebridge list?<br><br>Cheers,<br><font color="#888888">Thomas</font><div>
<div></div><div><br><br><div class="gmail_quote">
On Thu, Aug 5, 2010 at 11:45 AM, Mike Schachter <span dir="ltr"><<a href="mailto:mike@mindmech.com" target="_blank">mike@mindmech.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
Glen - that sounds reasonable to me (short bio overview on DNA
sequences,<br>
codons, amino acids, AA sequences, proteins), then how to use HMMs to
show<br>
how sequences are similar to eachother and all that other good stuff
they're used<br>
for that I don't know about.<br><br>Erin - that sounds good. Sorry I misunderstood what you were saying. We should<br>definitely work together on some of that stuff. Alternatively or in addition you could<br>work with Tom on HMMs in R.<br>
<br>
I could start the workshop by giving a short presentation on markov
processes<br>and HMMs, so we won't have to worry about the mathematical background when<br>talking about applications.<br><font color="#888888"><br> mike</font><div><div></div><div><br><br><br><br><br><div class="gmail_quote">
On Thu, Aug 5, 2010 at 11:43 AM, erin <span dir="ltr"><<a href="mailto:erin@j-fan.com" target="_blank">erin@j-fan.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">Hey,<br>
To clarify, the speech recognition thing I was talking about was not HMMs.<br>
I used lda, qda and kmeans, which could possibly become a workshop later.<br>
Also the guy I was talking about is not a speech person, he does music.<br>
<br>
There is an NLP paper I've been meaning to read about Markov Chains, so maybe<br>
I could talk about that, or else I can work with Mike to assist in presenting<br>
one of his topics.<br>
<br>
-Erin<br>
<div><br>
<br>
<br>
On Thu, Aug 5, 2010 at 11:10 AM, Mike Schachter <<a href="mailto:mike@mindmech.com" target="_blank">mike@mindmech.com</a>> wrote:<br>
<br>
> Hey guys (Erin, Tom, Glen, et. al),<br>
><br>
> I think 9pm is too late to be meeting up. I suggest we forgo next<br>
> week's 9pm meeting and put our heads together to give a nice 2 hour<br>
> HMM workshop/lecture set on Wednesday, August 19th, at 7:30pm. We<br>
> can advertise it on the ML list and noisebridge-discuss, and encourage<br>
> donations to Noisebridge for attendance to help pay their rent.<br>
><br>
> Here's the breakdown of what I think we could offer in that meeting:<br>
><br>
> Me/Anyone Else: The basic math behind Markov Processes and HMMs<br>
><br>
> Me/Erin/Erin's Speech Recognition Friend: Speech Recognition using HMMs<br>
><br>
> Tom: HMMs using R<br>
><br>
> Glen: HMMs in bioinformatics<br>
><br>
> Anyone else: ?<br>
><br>
> I feel like if we have two weeks to prepare something it'll give us time to<br>
> have good presentations and be worthwhile to everyone, what do you think?<br>
><br>
> mike<br>
><br>
><br>
<br>
<br>
--<br>
Whatever you can do or imagine, begin it;<br>
boldness has beauty, magic, and power in it.<br>
<br>
-- Goethe<br>
<br>
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<br></blockquote></div><br><br clear="all"><br></div></div>-- <br><div>Whatever you can do or imagine, begin it;<br>boldness has beauty, magic, and power in it.<br><br>-- Goethe <br>
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